Bis@JDQ

Bioinfomatics Server

Publications
1.
Li-Na Wang, Shao-Ping Shi, Hao-Dong Xu, Ping-Ping Wen, Jian-Ding Qiu, Computational prediction of species-specific malonylation sites via enhanced characteristic strategy , Bioinformatics, 2017, 33(10), 1457–1463.
2.
Ping-Ping Wen, Shao-Ping Shi, Hao-Dong Xu, Li-Na Wang, Jian-Ding Qiu*, Accurate in silico prediction of species-specific methylation sites based on information gain feature optimization, Bioinformatics, 2016, 32(20): 3107–3115.
3.
Hao-Dong Xu,Shao-Ping Shi, Ping-Ping Wen, Jian-Ding Qiu*, SuccFind: a novel succinylation sites online prediction tool via enhanced characteristic strategy, Bioinformatics, 2015, 31(23): 3748-3750.
4.
Shu-Yun Huang, Shao-Ping Shi, Jian-Ding Qiu*, Ming-Chu Liu, Using Support Vector Machines to Identify Protein Phosphorylation Sites in Viruses, Journal of Molecular Graphics and Modelling, 2015, 56: 84-90.
5.
Shao-Ping Shi, Xiang Chen, Hao-Dong Xu, Jian-Ding Qiu*, PredHydroxy: Computational prediction of protein hydroxylation site locations based on the primary structure, Molecular BioSystems, 2015, 11: 819-825.
6.
Hao-Dong Xu, Shao-Ping Shi, Xiang Chen, Jian-Ding Qiu*, Systematic Analysis of the Genetic Variability That Impacts SUMO Conjugation and Their Involvement in Human Diseases, Scientific Reports, 2015, 10.1038/srep10900.
7.
ShengBao Suo, JianDing Qiu*, Shao-Ping Shi, Xiang Chen, RuPing Liang, PSEA: Kinase-specific prediction and analysis of human phosphorylation substrates, Scientific Reports, 2014, 4, 4524.
8.
Xiang Chen, Jian-Ding Qiu*, Shao-Ping Shi, Sheng-Bao Suo, Ru-Ping Liang, Systematic Analysis and Prediction of Pupylation Sites in Prokaryotic Proteins, PLoS ONE, 2013, 8(9): 74002.
9.
Xiang Chen, Jianding Qiu*, Shaoping Shi, Shengbao Suo, Shuyun Huang, Ruping Liang, Incorporating key positions and amino acids features to identify general and species-specific ubiquitin conjugation sites, Bioinformatics, 2013, 29(13): 1614-1622.
10.
Shengbao Suo, Jianding Qiu*, Shaoping Shi, Xiang Chen, Shuyun Huang, Ruping Liang, Proteome-wide analysis of amino acid variations that influences protein lysine acetylation, Journal of Proteome Research, 2013, 12 (2): 949-958.
11.
Shaoping Shi, Xingyu Sun, Jianding Qiu*, Shengbao Suo, Xiang Chen, Shuyun Huang, Ruping Liang, The prediction of palmitoylation site locations using a multiple feature extraction methods, Journal of Molecular Graphics and Modelling, 2013, 40: 125-130.
12.
] Shaoping Shi, Jianding Qiu*, Xingyu Sun, Shengbao Suo, Shuyun Huang, Ruping Liang, PMeS: Prediction of methylation sites based on enhanced feature encoding scheme, PLoS ONE, 2012, 7(6): e38772.
13.
Shaoping Shi, Jianding Qiu*, Xingyu Sun, Shengbao Suo, Shuyun Huang, Ruping Liang, PLMLA: Prediction of lysine methylation and lysine acetylation by combining multiple features, Molecular BioSystems, 2012, 8 (5): 1520-1527.
14.
Ruping Liang, Shuyun Huang, Shaoping Shi, Xingyu Sun, Shengbao Suo, Jianding Qiu*, A novel hybridization algorithm combined support vector machine with discrete wavelet transform for prediction of protein subcellular localization, Computers in Biology and Medicine, 2012, 42(2): 180-187.
15.
Shuyun Huang, Shaoping Shi, Jianding Qiu*, Xingyu Sun, Shengbao Suo, PredSulSite: Prediction of protein tyrosine sulfation sites with multiple features and analysis, Analytical Biochemistry, 2012, 428(1): 16-23.
16.
Shaoping Shi, Jianding Qiu*, Xingyu Sun, Shengbao Suo, Shuyun Huang, Ruping Liang, A method to distinguish between lysine acetylation and lysine methylation from protein sequences, Journal of Theoretical Biology, 2012, 310: 223-230.
17.
Xingyu Sun, Shaoping Shi, Jianding Qiu*, Shengbao Suo, Shuyun Huang, Ruping Liang, Identifying protein quaternary structural attribute by incorporating physicochemical properties into the general form of Chou’s PseAAC via discrete wavelet transform, Molecular BioSystems, 2012, 8(12): 3178-3184.
18.
Shaoping Shi, Jianding Qiu*, Xingyu Sun, Jianhua Huang, Shuyun Huang, Shengbao Suo, Ruping Liang, Li Zhang, Identify submitochondria and subchloroplast locations with pseudo amino acid composition: Approach from the strategy of discrete wavelet transform feature extraction, Biochimica et Biophysica Acta-Molecular Cell Research, 2011, 1813(3): 424-430.
19.
Jianding Qiu, Xingyu Sun, Shengbao Suo, Shaoping Shi, Shuyun Huang, Ruping Liang, Li Zhang, Predicting homo-oligomers and hetero-oligomers by pseudo amino acid composition: An approach from discrete wavelet transformation,, Biochimie, 2011, 93(7): 1132-1138.
20.
Jianding Qiu, Shengbao Suo, Xingyu Sun, Shaoping Shi, Ruping Liang, OligoPred: A web-server for predicting homo-oligomeric proteins by incorporating discrete wavelet transform into Chou’s pseudo amino acid composition, Journal of Molecular Graphics and Modelling, 2011, 30: 129-134..
21.
Ruping Liang, Shuyun Huang, Shaoping Shi, Xingyu Sun, Shengbao Suo, Jianding Qiu*, A novel hybridization algorithm combined support vector machine with discrete wavelet transform for prediction of protein subcellular localization,, Computers in Biology and Medicine, 2011, 42(2): 180-187.
22.
Jianding Qiu, Sanhua Luo, Jianhua Huang, Xingyu Sun, Ruping Liang, Predicting subcellular location of apoptosis proteins based on wavelet transform and support vector machine, Amino Acids, 2010, 38(4): 1201-1208.
23.
Jianding Qiu, Xingyu Sun, Jianhua Huang, Ruping Liang, Prediction of the types of membrane proteins based on discrete wavelet transform and support vector machines, The Protein Journal, 2010, 29(2): 114-119.
24.
25.
Jianding Qiu, Sanhua Luo, Jianhua Huang, Ruping Liang, Using support vector machines for prediction of protein structural classes based on discrete wavelet transform, Journal of Computational Chemistry, 2009, 30(8): 1344-1350.
26.
Jianding Qiu, Sanhua Luo, Jianhua Huang, Ruping Liang, Using support vector machines to distinguish enzymes: Approached by incorporating wavelet transform, Journal of Theoretical Biology, 2009, 256(4): 625-631.
27.
Jianding Qiu, Jianhua Huang, Ruping Liang, Xiaoquan Lu, Prediction of G-protein-coupled receptor classes based on the concept of Chou's pseudo amino acid composition: An approach from discrete wavelet transform, Analytical Biochemistry, 2009, 390(1): 68-73.
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